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The project uses git submodules and depends on files that are in a zipped format.

git-lfs must be in the installed (for VTK-m) ( ).cmake and pkg-config must be in the system's PATH.You can do this in XCode by going to preferences -> locations and setting the command line tool version. In XCode 11.3.1, set your command line tools to 12.1 or higher (This prevents OpenSSL from complaining during compilation with linker errors).You can download this here: (requires being signed in to your developer account to view) Must use XCode 11.3.1, due to runtime errors this will NOT work with versions above.The button on the bottom of the page to "Extract DICOM headers to database" only works if you are using the app within a workspace, and you have a dataset called "image_analysis_findings" in your database.

On the left-side of the screen, you will see the orthogonal position of your current view. Under the image a table with the file information will be displayed. The image will be displayed in the middle of the screen, you can change the view plane by clicking on the Axial', 'Sagittal' or 'Coronal' tabs just above the image. Then, you can change the orientation of the image using the sliders below. You can select the patinet file to display using the dropdown menu on the left. The sample DICOM images displayed are from MRIs (source:, the library is called BRAINIX).įor more information about this app you can read the dedicated blog post at. Information about these packages can be found here. These are to read DICOM files, display volums and extract DICOM metadata. This mini-app allows users to interactively visualise and explore 3D DICOM volume utilising oro.dicom and oro.nifti packages.

For this reason, DICOM files are a great source of information in the field of medical imaging and image analysis and research. Allowing users to combine imaging and non-imaging data. DICOM standard is used in several imaging modalities, such as radiography, CT, MRI.ĭICOM files contain pixel information, as well as a lot of metadata about the method used to acquire the image, its orientation, study and patient information, amongst others. Digital Imaging and Communications in Medicine (DICOM) is an internationally recognised standard for the communication and managment of medical